For a full list of Possu's publications, see Google Scholar.
underline = lab members; bold = Possu; * = equal contribution; † = co-corresponding authors
Preprints and Submitted Manuscripts
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Semantic Segmentation of 3-D Protein Architectures in 2-D Contact Maps.
Eguchi RE, Huang PS. Under review. |
Publications
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Also accepted to and presented an ICLR workshop.
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De novo design of a fluorescence-activating β-barrel.
Dou JY*, Vorobieva AA*, Sheffler W, Doyle LA, Park H, Bick MJ, Mao BC, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, Vaughan JC, Stoddard BL, Baker D. Nature (2018). |
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Designing repeat proteins: a modular approach to protein design.
Parmeggiani F, Huang PS. Curr Opin Struct Biol (2017). |
Selected Publications, before Stanford
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Protein structure determination using metagenome sequence data.
Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Science (2017).
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The coming of age of de novo protein design.
Huang PS*, Boyken SE*, Baker D*. Nature (2016).
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De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.
Huang PS, Feldmeier K, Parmeggiani F, Velasco DAF, Höcker B, Baker D. Nat Chem Biol (2016).
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Exploring the repeat protein universe through computational protein design.
Brunette TJ*, Parmeggiani F*, Huang PS*, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D. Nature (2015). |
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High thermodynamic stability of parametrically designed helical bundles.
Huang PS*, Oberdorfer G*, Xu C*, Pei XY, Nannenga BL, Rogers JM, DiMaio F, Gonen T, Luisi B, Baker D. Science (2014). |
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A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield.
Pejchal R*, Doores KJ*, Walker LM*, Khayat R*, Huang PS*, Wang SK, Stanfield RL, Julien JP, Ramos A, Crispin M, Depetris R, Katpally U, Marozsan A, Cupo A, Maloveste S, Liu Y, McBride R, Ito Y, Sanders RW, Ogohara C, Paulson JC, Feizi T, Scanlan CN, Wong CH, Moore JP, Olson WC, Ward AB, Poignard P, Schief WR, Burton DR†, Wilson IA†. Science (2011). |
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RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design.
Huang PS, Ban YA, Richter F, Andre I, Vernon R, Schief WR†, Baker D†. PLoS ONE (2011).
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